PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08195_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 345aa    MW: 39835.6 Da    PI: 5.2086
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08195_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.2e-35441362103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k++++++d++++ ++sws+ g+sf+v+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k+++++         weF+++
  Cotton_A_08195_BGI-A2_v1.0  44 FLTKTFDMVDDPSTNYIVSWSSGGSSFIVWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDSDK---------WEFANE 117
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                  F +g+++ll++i+r+k++
  Cotton_A_08195_BGI-A2_v1.0 118 GFVRGQRDLLKSIRRRKTT 136
                                 ****************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3439133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-3840133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-6040133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNPYFPVKEE YPSSSYSQSD DDAPRMMELP QPVEGLHDSG PPPFLTKTFD MVDDPSTNYI  60
VSWSSGGSSF IVWDPHSFST NLLPRYFKHN NFSSFVRQLN TYGFRKIDSD KWEFANEGFV  120
RGQRDLLKSI RRRKTTTSQL PTSQQSLGPC VEVGRFGLDG EVDRLRRDNQ VLTMELVKLR  180
QQQLSTRAYI QAIEERLQCT EKKQQQMMSF LARAIQNPSF LQQLMQQKER TKDLEEAMSR  240
KRMRPIVQLP LGVDVGESSR GSDGTNPVKT KPLEFGDYGY QVTELEALAL EMQGYGRTRR  300
GQEESQNGHE HRESHDKELD EGFWEELLNE KFLELDIPGT ELARD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-263913815125Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674040.0KR067404.1 Gossypium hirsutum HSF23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490602.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
RefseqXP_012490603.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
RefseqXP_012490604.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
RefseqXP_012490605.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
SwissprotQ8H7Y61e-121HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0D2SCW60.0A0A0D2SCW6_G
STRINGVIT_00s0179g00150.t011e-152(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-117heat shock transcription factor A6B